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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015904261.1_cds_XP_016454399.1_48429
CDS Infomation

[gene=LOC107778627] [db_xref=GeneID:107778627] [protein=5-epi-aristolochene synthase-like] [protein_id=XP_016454399.1] [location=join(11721..11831,11958..12216,12316..12691,12768..12986,13142..13280,13433..13678,13781..14077)] [gbkey=CDS]
Sequence

ATGGCCGCAGCAGCAGTTGGCAACTATGAAGAAGATATTGTTCGCCCCGTCGCCGACTTC
TCCCCTAGTCTATGGGGTGATCAGTTCCTTTCATTCTCCATTGATAATCAGGTTGCGGAA
AAGTATGCTAAAGAGATTGAAGCACCGAAGGAACAAACGAGGAATATGCTGTTAGCAACT
GGAATGAAATTGGCTGATACATTGAATTTGATTGACATTATTGAACGTCTTGGCATCTCC
TACCACTTTGAAAAAGAAATTGATGAGATTTTAGATCAGATTTACAACCAAAACTCAAAC
TGCGATGATTTGAGCACTTCTGCACTTCAATTTCGATTGCTCAGGCAACATGGTTTCAAC
ATCTCTCCTGAAATTTTCAGCAAATTCCAAGATGAAAATGGCAAATTCAAAGAGTCTCTT
GCTAGTGATGTCTTAGGATTATTGAACTTGTATGAAGCTTCACATGCAAGGACTCATGCT
GACGATATCTTACAAGACGCACTTGCTTTCTCCACTATCCATCTTGAATTTGTAGCTCCA
CATTTGAAATCTCCACTTAGAGAGCAAGTGACACATGCCCTTGAGCAATGTTTGCACAAG
GGCGTTCCTAGAGTCGAGACCCGATTCTTCATCTCATCAATCTATGAGAAGGAACAATCA
AAAAATAATATGTTACTTCGATTTGCCAAATTGGATTTTAACTTGCTCCAGATGTTACAC
AAACAAGAACTGGCTGAAGTATCAAGGTGGTGGAAAGATTTGGATTTCGTAACAACACTT
CCATATGCTAGAGATCGAGTAGTTGAATGTTACTTTTGGGCATTAGGAGTTTATTTTGAG
CCTCAATACTCCCAAGCTCGCGTCATGCTCGTTAAGACCATATCAATGATTTCGATTGTC
GATGATACCTTTGATGCTTACGGTACAGTTAAAGAACTTGAGGCATACACAGATGCCATA
CAAAGGTGGGATATAAACGAAATTGATCGGCTTCCTGATTACATGAAAATCAGTTATAAA
GCTATTCTAGATCTTTATAAGGATTATGAAAAGGAATTATCTAGTGTTGGAAGATCTCAT
ATTGTCTGCCATGCAATAGAAAGAATGAAAGAAGTAGTAAGAAATTATAATGTCGAGTCA
ACATGGTTTATTGAAGGATATAAGCCACCTGTTTCTGAATACCTAAGCAATGCACTAGCA
ACTACTACATATTACTACCTCGCAACAACATCGTATTTAGGCATGAAGTCTGTTACAGAG
CAGGATTTTGAATGGTTGTCAAAGAATCCTAAAATTCTTGAAGCTAGTGTGATAATATGC
CGAGTTATTGATGACACAGCCACATACGAGGTTGAGAAAACTAGGGGACAAATTGCAACA
GGAATTGAGTGCTGCATGAGAGATTATGGCATATCAACAGAAGAGGCAATGACTAAATTT
CAAGAAATGGCTGAGGCAGCATGGAAGGATCTTAATGAAGGACTTCTTAGGCCCACTCCT
GTCTCTACAGAGTTTTTATCTCGTATTCTCAATCTTGCACGTATTGTTGAGGTTACATAT
ATACACAATCTAGATGGATACACTCATCCGGAAAAAGTCTTAAAACCTCACATTAATGCC
CTAGTTGTGGACTCCATCGAAATTTGA

Peptide Sequence

PEP ID

XP_016454399.1
PEP Infomation

PREDICTED: 5-epi-aristolochene synthase-like [Nicotiana tabacum]
Sequence

MAAAAVGNYEEDIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEAPKEQTRNMLLAT
GMKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCDDLSTSALQFRLLRQHGFN
ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHARTHADDILQDALAFSTIHLEFVAP
HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYEKEQSKNNMLLRFAKLDFNLLQMLH
KQELAEVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV
DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSVGRSH
IVCHAIERMKEVVRNYNVESTWFIEGYKPPVSEYLSNALATTTYYYLATTSYLGMKSVTE
QDFEWLSKNPKILEASVIICRVIDDTATYEVEKTRGQIATGIECCMRDYGISTEEAMTKF
QEMAEAAWKDLNEGLLRPTPVSTEFLSRILNLARIVEVTYIHNLDGYTHPEKVLKPHINA
LVVDSIEI

Transcript Sequence

Gene sequence data has not been registered.